Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8459

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16826 and 16827 are separated by 300 nucleotides mRNA_8458: 16826 - Hypothetical Protein, at 1,283,609 to 1,284,091 16826 mRNA_8459: 16827 - SUPERFAMILY--SSF50685, at 1,284,392 to 1,285,740 16827

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,283,412 + +0.4
1,283,425 + +0.5
1,283,445 - -0.3
1,283,452 - +1.2
1,283,452 - -0.1
1,283,453 + +0.0
1,283,578 + +2.2
1,283,593 - +0.7
1,283,601 - +0.5
1,283,603 - +1.7
1,283,607 + +0.3
1,283,645 - -0.4
1,283,724 - 16826 mRNA_8458 0.24 +0.5
1,283,747 + 16826 mRNA_8458 0.29 -0.3
1,283,757 + 16826 mRNA_8458 0.31 +0.5
1,283,770 + 16826 mRNA_8458 0.33 -0.0
1,283,771 + 16826 mRNA_8458 0.34 +0.7
1,283,772 - 16826 mRNA_8458 0.34 +0.1
1,283,797 + 16826 mRNA_8458 0.39 +0.0
1,283,882 - 16826 mRNA_8458 0.57 +0.2
1,283,926 - 16826 mRNA_8458 0.66 -0.2
1,283,965 + 16826 mRNA_8458 0.74 -0.5
1,284,188 + +0.7
1,284,230 + +0.7
1,284,451 - +0.2
1,284,527 + 16827 mRNA_8459 0.10 +1.6
1,284,552 + 16827 mRNA_8459 0.12 +0.3
1,284,919 - 16827 mRNA_8459 0.39 +0.1
1,285,383 - 16827 mRNA_8459 0.73 +0.9
1,285,492 + 16827 mRNA_8459 0.82 +0.5
1,285,839 + -0.1
1,285,841 - +0.4
1,285,997 - -0.4
1,286,115 + +0.4
1,286,149 - +0.8
1,286,172 - +0.4
1,286,263 - +0.8
1,286,278 + +0.3
1,286,388 - +0.6
1,286,391 - +0.3
1,286,417 - +0.0
1,286,513 + +1.2
1,286,547 - +0.4
1,286,569 - +0.7
1,286,692 + +0.7

Or see this region's nucleotide sequence