Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8476

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16843 and 16844 are separated by 891 nucleotides16844 and 16845 are separated by 263 nucleotides mRNA_8475: 16843 - K03113 EIF1, SUI1 translation initiation factor 1, at 1,316,570 to 1,317,509 16843 mRNA_8476: 16844 - BLAST glycoside hydrolase family 43 protein [Mycena chlorop..., at 1,318,401 to 1,318,799 16844 mRNA_8477: 16845 - KOG4405 GDP dissociation inhibitor, at 1,319,063 to 1,321,156 16845

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,317,575 + +0.1
1,317,700 - +0.3
1,317,713 + +1.2
1,317,714 - +0.2
1,317,872 - +1.3
1,317,876 - +0.8
1,317,896 + -0.4
1,317,983 - +0.6
1,317,999 + +0.5
1,318,023 + +0.9
1,318,088 + -0.0
1,318,146 - +0.5
1,318,149 + +1.2
1,318,172 - -0.3
1,318,172 - -0.3
1,318,200 - -0.4
1,318,226 - +0.3
1,318,342 + +0.8
1,318,404 + +0.4
1,318,522 + 16844 mRNA_8476 0.30 +1.7
1,318,683 + 16844 mRNA_8476 0.71 -0.2
1,318,804 + -0.2
1,318,933 + +1.3
1,318,933 + -0.2

Or see this region's nucleotide sequence