Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8490

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16857 and 16858 are separated by 606 nucleotides mRNA_8489: 16857 - K17768 TOM70 mitochondrial import receptor subunit TOM70, at 1,344,985 to 1,347,590 16857 mRNA_8490: 16858 - ProSitePatterns-Zinc finger PHD-type signature.-PS01359,ProSiteProfiles-Zinc finger PHD-type profile.-PS50016,SMART-PHD zinc finger-SM00249,SUPERFAMILY--SSF57903, at 1,348,197 to 1,351,879 16858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,347,316 - 16857 mRNA_8489 0.89 +0.7
1,347,444 - -0.7
1,347,455 - +0.7
1,347,455 - +0.2
1,347,460 + +0.2
1,347,460 + +0.4
1,347,462 + -0.3
1,347,467 - +0.2
1,347,470 - -1.3
1,347,476 - +0.2
1,347,482 - +1.6
1,347,545 - +0.8
1,347,557 + +0.8
1,347,612 - -1.2
1,347,615 + +0.8
1,347,633 - +1.1
1,347,926 - +0.7
1,347,948 - -0.4
1,348,027 - +0.2
1,348,035 - -0.1
1,348,046 - -0.2
1,348,050 - +1.2
1,348,055 - +1.8
1,348,056 - +0.2
1,348,056 - -0.2
1,348,057 - +0.9
1,348,062 + -0.1
1,348,073 - +0.8
1,348,099 + +0.5
1,348,155 - +0.4
1,348,175 - -0.6
1,348,342 - +1.5
1,348,355 - +0.5
1,348,367 + -0.2
1,348,504 - +0.2
1,348,519 - -0.2
1,348,523 + -0.0
1,348,527 + +0.2
1,348,553 + +0.1
1,348,638 - 16858 mRNA_8490 0.12 -0.2
1,348,643 - 16858 mRNA_8490 0.12 -0.3
1,348,708 - 16858 mRNA_8490 0.14 +0.2
1,348,885 - 16858 mRNA_8490 0.19 +1.0
1,348,902 - 16858 mRNA_8490 0.19 -0.1
1,348,907 - 16858 mRNA_8490 0.19 -0.3
1,348,911 - 16858 mRNA_8490 0.19 -0.7
1,348,923 + 16858 mRNA_8490 0.20 -0.2
1,348,944 - 16858 mRNA_8490 0.20 -1.1
1,348,958 - 16858 mRNA_8490 0.21 -0.4
1,349,131 - 16858 mRNA_8490 0.25 -0.5
1,349,191 - 16858 mRNA_8490 0.27 +0.0
1,349,243 + 16858 mRNA_8490 0.28 -0.3
1,349,263 + 16858 mRNA_8490 0.29 +0.4
1,349,274 - 16858 mRNA_8490 0.29 -0.0
1,349,313 - 16858 mRNA_8490 0.30 +0.1
1,349,393 - 16858 mRNA_8490 0.32 +0.1
1,349,403 + 16858 mRNA_8490 0.33 +0.1
1,349,417 + 16858 mRNA_8490 0.33 -0.2
1,349,489 - 16858 mRNA_8490 0.35 +0.1
1,349,531 - 16858 mRNA_8490 0.36 -0.2
1,349,540 + 16858 mRNA_8490 0.36 -0.1
1,349,567 - 16858 mRNA_8490 0.37 -0.5
1,349,680 - 16858 mRNA_8490 0.40 -0.1
1,349,694 + 16858 mRNA_8490 0.41 -0.3
1,349,707 - 16858 mRNA_8490 0.41 +0.3
1,349,765 - 16858 mRNA_8490 0.43 +0.0
1,349,847 - 16858 mRNA_8490 0.45 +0.0
1,349,894 + 16858 mRNA_8490 0.46 +0.5
1,349,954 - 16858 mRNA_8490 0.48 -0.2
1,349,959 + 16858 mRNA_8490 0.48 +0.4
1,349,966 - 16858 mRNA_8490 0.48 +0.6
1,349,983 - 16858 mRNA_8490 0.48 +0.1
1,350,103 - 16858 mRNA_8490 0.52 -0.2
1,350,112 + 16858 mRNA_8490 0.52 +1.1
1,350,157 + 16858 mRNA_8490 0.53 +1.4
1,350,158 - 16858 mRNA_8490 0.53 +0.5
1,350,279 - 16858 mRNA_8490 0.57 -0.1
1,350,290 - 16858 mRNA_8490 0.57 -0.6
1,350,322 - 16858 mRNA_8490 0.58 -0.0
1,350,407 - 16858 mRNA_8490 0.60 -0.3
1,350,507 - 16858 mRNA_8490 0.63 +0.5
1,350,524 - 16858 mRNA_8490 0.63 -1.0
1,350,564 - 16858 mRNA_8490 0.64 +0.2
1,350,575 - 16858 mRNA_8490 0.65 -0.4
1,350,598 - 16858 mRNA_8490 0.65 +0.2
1,350,599 + 16858 mRNA_8490 0.65 -0.2
1,350,611 - 16858 mRNA_8490 0.66 +0.1
1,350,614 + 16858 mRNA_8490 0.66 +0.3
1,350,627 - 16858 mRNA_8490 0.66 +0.2
1,350,662 - 16858 mRNA_8490 0.67 -0.1
1,350,687 + 16858 mRNA_8490 0.68 +1.0
1,350,688 - 16858 mRNA_8490 0.68 +0.5
1,350,708 - 16858 mRNA_8490 0.68 +0.5
1,350,785 + 16858 mRNA_8490 0.70 -0.6
1,350,860 + 16858 mRNA_8490 0.72 -0.5
1,350,866 + 16858 mRNA_8490 0.72 -0.9
1,350,872 - 16858 mRNA_8490 0.73 +0.0
1,350,915 - 16858 mRNA_8490 0.74 -0.1
1,351,019 - 16858 mRNA_8490 0.77 +1.0
1,351,019 - 16858 mRNA_8490 0.77 -0.2
1,351,059 - 16858 mRNA_8490 0.78 -0.4
1,351,066 - 16858 mRNA_8490 0.78 -0.3
1,351,083 - 16858 mRNA_8490 0.78 +0.5
1,351,093 + 16858 mRNA_8490 0.79 -0.0
1,351,096 - 16858 mRNA_8490 0.79 -0.0
1,351,099 + 16858 mRNA_8490 0.79 +0.8
1,351,140 - 16858 mRNA_8490 0.80 -0.4
1,351,142 - 16858 mRNA_8490 0.80 -0.4
1,351,145 - 16858 mRNA_8490 0.80 +0.1
1,351,161 - 16858 mRNA_8490 0.80 +0.0
1,351,185 - 16858 mRNA_8490 0.81 +0.6
1,351,204 + 16858 mRNA_8490 0.82 -0.5
1,351,227 - 16858 mRNA_8490 0.82 -0.1
1,351,241 - 16858 mRNA_8490 0.83 -0.8
1,351,259 + 16858 mRNA_8490 0.83 +0.7
1,351,280 + 16858 mRNA_8490 0.84 +2.6
1,351,295 + 16858 mRNA_8490 0.84 +0.8
1,351,311 - 16858 mRNA_8490 0.85 +0.7
1,351,316 + 16858 mRNA_8490 0.85 -0.4
1,351,320 - 16858 mRNA_8490 0.85 -0.2
1,351,374 - 16858 mRNA_8490 0.86 -0.1
1,351,389 - 16858 mRNA_8490 0.87 +0.2
1,351,423 - 16858 mRNA_8490 0.88 -0.3
1,351,478 + 16858 mRNA_8490 0.89 +0.5
1,351,483 + 16858 mRNA_8490 0.89 -0.2
1,351,484 - 16858 mRNA_8490 0.89 -0.5
1,351,486 - 16858 mRNA_8490 0.89 +1.3
1,351,489 - 16858 mRNA_8490 0.89 +0.3
1,351,509 - 16858 mRNA_8490 0.90 +0.5
1,351,514 - -0.0
1,351,530 - -0.2
1,351,554 - +0.0
1,351,561 + -0.6
1,351,568 + +0.5
1,351,576 - +1.3
1,351,589 - -0.4
1,351,618 - +0.0
1,351,620 - +0.1
1,351,620 - +0.1
1,351,637 - -0.3
1,351,646 - -0.4
1,351,653 - +0.0
1,351,680 - +0.3
1,351,721 - +0.8
1,351,750 + +1.7
1,351,760 + -1.0
1,351,763 - +0.2
1,351,763 - +0.3
1,351,766 + +0.3
1,351,770 + -0.2
1,351,773 - -0.0
1,351,773 - -0.3
1,351,773 - +0.0
1,351,777 + +1.0
1,351,784 - +0.2
1,351,787 - +0.2
1,351,789 - +0.5
1,351,812 + +1.1
1,351,813 - -0.0
1,351,836 - -0.6
1,351,850 - +0.4
1,351,869 - -0.5
1,351,877 - +0.0
1,351,877 - +0.7
1,351,877 - -0.4
1,351,883 + -0.4
1,351,885 - +0.4
1,351,886 + +0.4
1,351,892 + +0.1
1,351,895 - +0.4
1,351,896 + +0.3
1,351,898 - +0.9
1,351,905 - +0.2
1,351,923 - +0.1
1,351,933 + -0.0
1,351,940 - -1.4
1,351,941 + +1.0
1,351,946 - -1.0
1,351,946 + +1.1
1,351,950 - +0.6
1,351,950 - +1.5
1,351,965 - +0.3
1,351,968 - +0.6
1,351,978 - +0.3
1,352,002 + -0.3
1,352,003 - -0.3
1,352,003 - +0.7
1,352,006 - +2.3
1,352,006 - +0.7
1,352,006 - +0.5
1,352,006 - -0.2
1,352,006 - -0.0
1,352,007 - +0.6
1,352,009 - -0.3
1,352,013 - +0.3
1,352,036 - +0.1
1,352,042 - +0.2
1,352,042 - -0.3
1,352,042 - -0.9
1,352,042 - +1.6
1,352,042 - +1.2
1,352,042 - +0.7
1,352,042 - +1.1

Or see this region's nucleotide sequence