Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8369 and 8370 are separated by 779 nucleotides mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1,571 to 2,453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3,233 to 7,809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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595 + -0.2
609 - -0.6
637 - -0.3
651 + -1.1
654 + -0.2
659 - +0.5
663 + +0.4
672 - +1.1
673 + +0.2
685 + +0.9
725 + +0.1
790 - +0.7
791 + +0.2
798 + +0.8
798 + +0.2
804 - +0.8
821 + -0.4
860 + +0.2
899 - +0.2
916 + -0.2
939 + +0.0
957 + -1.5
975 - -1.0
976 + +2.1
996 - +0.4
1,005 + +0.9
1,005 - +0.7
1,007 - -0.1
1,052 + -0.8
1,058 + +0.8
1,070 + -0.6
1,113 - +0.3
1,115 - +0.1
1,117 + +0.7
1,207 + +0.3
1,257 + +1.2
1,285 - -0.3
1,359 - +0.2
1,422 + -1.1
1,960 + 8369 mRNA_1 0.44 -0.9
2,268 + 8369 mRNA_1 0.79 -0.1
2,361 - 8369 mRNA_1 0.89 -0.4
2,441 + +1.4
2,550 + +0.1
2,552 - +1.4
2,564 + +2.2
2,701 + +0.9
2,839 - -0.1
2,853 + +0.2
2,946 - +0.2
3,005 - -0.6
3,125 - +0.1
3,136 + +0.6

Or see this region's nucleotide sequence