Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_57

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8424 and 8425 are separated by 361 nucleotides8425 and 8426 are separated by 663 nucleotides mRNA_56: 8424 - K09499 CCT7 T-complex protein 1 subunit eta, at 131,074 to 133,280 8424 mRNA_57: 8425 - K15176 CTR9 RNA polymerase-associated protein CTR9, at 133,642 to 138,012 8425 mRNA_58: 8426 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 138,676 to 140,962 8426

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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133,327 - +0.7
133,335 - +2.0
133,337 + +0.9
133,337 + +1.0
133,343 - +0.3
133,353 + +0.8
133,460 - +0.6
133,482 + +0.9
133,487 + +1.0
137,847 + -0.7
138,126 - +1.7
138,131 - -0.0
138,147 - +0.5
138,156 + -0.2
138,164 + +0.1
138,186 + +0.3
138,187 - +0.4
138,238 - -1.4
138,293 - +1.3
138,302 - -0.6
138,314 - +0.7
138,322 + +1.8
138,328 + -0.1
138,335 - +0.2
138,461 - -0.2
138,645 + +1.2
138,649 - +1.1
138,661 - -0.0
138,947 + 8426 mRNA_58 0.12 -0.2

Or see this region's nucleotide sequence