Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_72

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8439 and 8440 are separated by 214 nucleotides mRNA_71: 8439 - HMMPfam-YABBY protein-PF04690,SUPERFAMILY--SSF47095, at 167,576 to 168,117 8439 mRNA_72: 8440 - BLAST apses-domain-containing protein [Moesziomyces ant..., at 168,332 to 168,818 8440

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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167,411 + -0.0
167,413 + +0.2
168,130 - +0.2
168,149 + +1.0
168,153 - -0.9
168,297 - +0.3
168,458 + 8440 mRNA_72 0.26 +2.2
168,476 + 8440 mRNA_72 0.30 +0.4
168,586 + 8440 mRNA_72 0.52 +0.6
168,596 + 8440 mRNA_72 0.54 +0.5
168,732 + 8440 mRNA_72 0.82 +0.4
168,735 + 8440 mRNA_72 0.83 +0.2
168,789 + +0.6
168,846 + +0.6
168,861 - +0.5
168,864 - +0.6
168,906 + -0.2
168,935 - +0.7
169,155 - +0.7
169,182 - +0.2
169,202 + -0.0
169,356 + +1.0
169,358 - +0.6
169,648 - -0.3
169,668 - -0.5
169,790 - -0.3

Or see this region's nucleotide sequence