Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_87

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8454 and 8455 are separated by 339 nucleotides8455 and 8456 are separated by 465 nucleotides mRNA_86: 8454 - K01452 E3.5.1.41 chitin deacetylase, at 204,818 to 206,685 8454 mRNA_87: 8455 - BLAST HAP1, N-terminal [Xanthophyllomyces dendrorhous], at 207,025 to 210,193 8455 mRNA_88: 8456 - K17361 ACOT9 acyl-coenzyme A thioesterase 9, at 210,659 to 212,272 8456

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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206,088 + 8454 mRNA_86 0.68 +0.3
206,167 - 8454 mRNA_86 0.72 +1.2
206,167 - 8454 mRNA_86 0.72 -0.5
206,171 + 8454 mRNA_86 0.72 +1.7
206,231 - 8454 mRNA_86 0.76 -0.5
206,446 - 8454 mRNA_86 0.87 -0.6
206,466 - 8454 mRNA_86 0.88 -2.2
206,469 + 8454 mRNA_86 0.88 +0.7
206,642 + +0.8
206,790 + +0.6
206,883 - -0.2
207,767 - 8455 mRNA_87 0.23 -0.0
207,815 + 8455 mRNA_87 0.25 -1.5
207,833 + 8455 mRNA_87 0.25 -0.4
209,433 + 8455 mRNA_87 0.76 +0.3
209,579 - 8455 mRNA_87 0.81 +1.3
209,580 + 8455 mRNA_87 0.81 -0.6
209,692 - 8455 mRNA_87 0.84 +0.2
209,713 + 8455 mRNA_87 0.85 -0.3
209,740 - 8455 mRNA_87 0.86 -0.1
209,807 + 8455 mRNA_87 0.88 +1.0
209,891 + -0.4
210,158 - +0.3
210,162 + +0.1
210,167 - -0.8
210,173 - -0.2
210,176 + +0.7
210,179 - +1.0
210,179 - +0.5
210,307 + +1.4
210,320 - +1.2
210,321 - +1.8
210,337 + +0.5
210,345 + -1.2
210,368 - +0.1
210,399 - -0.5
210,407 - +0.9
210,418 + +0.1
210,431 + -0.2
210,439 - +0.3
210,449 - -0.0
210,453 - -0.7
210,460 - +0.1
210,476 - +1.2
210,487 + -1.7
210,546 - -0.5
210,568 + +0.9
210,579 + -0.1
210,593 - +0.9
210,600 + -0.5
210,603 - +0.5
210,604 + -0.0
210,610 - +1.6
210,628 + -0.1
210,630 + -0.1
210,637 + +1.0
210,639 - +0.2
210,639 + +1.5
210,645 + -0.5
210,654 - +0.2
210,662 + -0.2
210,663 + +1.8
210,672 + -0.7
210,684 - +0.6
210,772 + +0.1
210,794 + -0.5
210,797 - +0.5
211,078 + 8456 mRNA_88 0.26 -0.6

Or see this region's nucleotide sequence