Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_92

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8459 and 8460 are separated by 478 nucleotides mRNA_91: 8459 - HMMPfam-Domain of unknown function (DUF4604)-PF15377, at 216,175 to 216,894 8459 mRNA_92: 8460 - KOG2914 Predicted haloacid-halidohydrolase and related hydrolases, at 217,373 to 218,871 8460

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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216,567 - 8459 mRNA_91 0.54 -0.2
216,580 + 8459 mRNA_91 0.56 +0.1
216,718 - 8459 mRNA_91 0.75 -0.0
216,739 - 8459 mRNA_91 0.78 +0.5
217,761 + 8460 mRNA_92 0.26 -0.5
218,475 + 8460 mRNA_92 0.74 +1.5
218,492 - 8460 mRNA_92 0.75 -0.2
218,620 + 8460 mRNA_92 0.83 +0.1
218,765 - +0.3
219,036 + +0.5
219,050 - -0.6
219,077 + -0.6
219,109 + +0.6
219,176 + +0.5
219,207 + +0.1
219,221 - -0.9
219,225 + -0.3
219,234 + +1.3
219,236 + +0.7
219,244 + -0.2
219,245 - +0.4
219,250 + +0.2
219,252 + +0.4
219,255 - -0.7
219,263 - +0.2
219,275 + -0.1
219,278 - +0.4
219,287 - +0.2
219,294 - +0.0
219,393 + +0.5
219,399 - +0.7
219,406 - +1.2
219,408 - +1.3
219,508 - +0.5
219,529 + +0.8
219,532 + -0.8
219,542 - +1.7
219,546 - -0.3
219,547 + -0.4
219,668 - -0.1
219,669 - -0.6
219,672 + +1.1

Or see this region's nucleotide sequence