Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_108

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8475 and 8476 are separated by 438 nucleotides8476 and 8477 are separated by 108 nucleotides mRNA_107: 8475 - K08592 SENP1 sentrin-specific protease 1, at 257,033 to 257,891 8475 mRNA_108: 8476 - Hypothetical Protein, at 258,330 to 258,956 8476 mRNA_109: 8477 - Hypothetical Protein, at 259,065 to 259,869 8477

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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259,287 - 8477 mRNA_109 0.28 -0.3
259,765 + 8477 mRNA_109 0.87 -0.2
259,910 - +0.3
259,917 - +0.1
259,955 + -1.6

Or see this region's nucleotide sequence