Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_160

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8527 and 8528 are separated by 734 nucleotides8528 and 8529 are separated by 889 nucleotides mRNA_159: 8527 - Hypothetical Protein, at 394,494 to 395,592 8527 mRNA_160: 8528 - K05349 bglX beta-glucosidase, at 396,327 to 398,883 8528 mRNA_161: 8529 - KOG1727 Microtubule-binding protein (translationally controlled tumor protein), at 399,773 to 400,854 8529

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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395,573 + +0.2
395,686 + +0.0
396,176 + -0.0
396,607 + 8528 mRNA_160 0.11 -0.1
396,692 - 8528 mRNA_160 0.14 +0.4
397,006 + 8528 mRNA_160 0.27 -1.3
397,347 + 8528 mRNA_160 0.40 -0.2
397,488 + 8528 mRNA_160 0.45 +0.2
397,903 - 8528 mRNA_160 0.62 -1.3
398,054 + 8528 mRNA_160 0.68 +1.0
398,343 + 8528 mRNA_160 0.79 -0.7
398,486 - 8528 mRNA_160 0.84 -0.3
398,504 + 8528 mRNA_160 0.85 -1.5
398,688 + +1.0
398,995 - +0.6
399,262 + +0.8
399,284 - +0.9

Or see this region's nucleotide sequence