Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_205

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8571 and 8572 are separated by 17 nucleotides8572 and 8573 are separated by 200 nucleotides mRNA_203: 8571 - SUPERFAMILY--SSF51197, at 499,764 to 500,298 8571 mRNA_204: 8572 - Hypothetical Protein, at 500,316 to 500,871 8572 mRNA_205: 8573 - KOG4267 Predicted membrane protein, at 501,072 to 501,667 8573

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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500,100 + 8571 mRNA_203 0.63 -0.1
500,110 + 8571 mRNA_203 0.65 +0.0
500,274 - +0.1
500,401 - 8572 mRNA_204 0.15 +0.1
500,425 - 8572 mRNA_204 0.20 +0.7
500,538 - 8572 mRNA_204 0.40 +0.6
500,549 - 8572 mRNA_204 0.42 +0.2
500,550 + 8572 mRNA_204 0.42 -0.0
500,553 - 8572 mRNA_204 0.43 +0.3
500,553 - 8572 mRNA_204 0.43 +0.3
500,563 - 8572 mRNA_204 0.44 +0.3
500,566 - 8572 mRNA_204 0.45 +0.6
500,566 - 8572 mRNA_204 0.45 +1.7
500,573 - 8572 mRNA_204 0.46 +0.1
500,608 - 8572 mRNA_204 0.53 +0.1
500,633 + 8572 mRNA_204 0.57 -0.1
500,660 + 8572 mRNA_204 0.62 +0.1
500,710 + 8572 mRNA_204 0.71 -0.5
500,712 - 8572 mRNA_204 0.71 -0.0
500,858 - +0.5
500,959 - +0.7
500,963 - -0.0
500,974 + +1.0
501,553 + 8573 mRNA_205 0.81 +0.4
501,565 - 8573 mRNA_205 0.83 +1.9
501,578 - 8573 mRNA_205 0.85 +0.3
501,981 + +1.8
502,023 + +0.4
502,161 - +0.2
502,162 + +1.1
502,188 - +0.3
502,409 + +0.1

Or see this region's nucleotide sequence