Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_215

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8582 and 8583 are separated by 757 nucleotides8583 and 8584 are separated by 290 nucleotides mRNA_214: 8582 - Hypothetical Protein, at 527,992 to 533,023 8582 mRNA_215: 8583 - Hypothetical Protein, at 533,781 to 534,618 8583 mRNA_216: 8584 - BLAST protein of choline transporter-like family [Rhodo..., at 534,909 to 538,209 8584

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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533,164 + +1.8
533,504 - +0.4
533,524 - -0.5
533,539 - +0.3
533,939 + 8583 mRNA_215 0.19 -1.1
534,101 + 8583 mRNA_215 0.38 +1.2
534,512 - 8583 mRNA_215 0.87 +0.7
534,563 - -0.3
534,575 + -0.0
534,575 + +0.7
534,826 - +1.0
534,857 + +0.2
535,057 + +1.4
535,588 + 8584 mRNA_216 0.21 +1.2

Or see this region's nucleotide sequence