Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_216

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8583 and 8584 are separated by 290 nucleotides8584 and 8585 are separated by 340 nucleotides mRNA_215: 8583 - Hypothetical Protein, at 533,781 to 534,618 8583 mRNA_216: 8584 - BLAST protein of choline transporter-like family [Rhodo..., at 534,909 to 538,209 8584 mRNA_217: 8585 - K02292 crtO beta-carotene ketolase (CrtO type), at 538,550 to 540,960 8585

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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533,939 + 8583 mRNA_215 0.19 -1.1
534,101 + 8583 mRNA_215 0.38 +1.2
534,512 - 8583 mRNA_215 0.87 +0.7
534,563 - -0.3
534,575 + -0.0
534,575 + +0.7
534,826 - +1.0
534,857 + +0.2
535,057 + +1.4
535,588 + 8584 mRNA_216 0.21 +1.2
535,825 + 8584 mRNA_216 0.28 +0.4
535,859 + 8584 mRNA_216 0.29 +1.1
535,967 + 8584 mRNA_216 0.32 +0.6
535,969 + 8584 mRNA_216 0.32 +1.1
535,980 + 8584 mRNA_216 0.32 +0.0
535,991 - 8584 mRNA_216 0.33 +1.1
536,009 - 8584 mRNA_216 0.33 +0.3
536,018 + 8584 mRNA_216 0.34 +0.6
536,019 - 8584 mRNA_216 0.34 +0.2
536,033 + 8584 mRNA_216 0.34 -1.4
536,060 + 8584 mRNA_216 0.35 -0.1
536,079 - 8584 mRNA_216 0.35 +0.9
536,087 + 8584 mRNA_216 0.36 -1.0
536,091 + 8584 mRNA_216 0.36 +1.1
536,101 + 8584 mRNA_216 0.36 +1.7
536,107 + 8584 mRNA_216 0.36 +0.9
536,107 + 8584 mRNA_216 0.36 -0.2
536,120 + 8584 mRNA_216 0.37 +1.2
536,129 - 8584 mRNA_216 0.37 -0.1
536,131 + 8584 mRNA_216 0.37 -0.0
536,136 + 8584 mRNA_216 0.37 +0.8
536,143 + 8584 mRNA_216 0.37 -0.1
536,148 - 8584 mRNA_216 0.38 +0.0
536,148 - 8584 mRNA_216 0.38 +0.9
536,151 + 8584 mRNA_216 0.38 -0.5
536,163 - 8584 mRNA_216 0.38 +0.3
536,171 - 8584 mRNA_216 0.38 -0.5
536,175 + 8584 mRNA_216 0.38 +0.0
536,195 - 8584 mRNA_216 0.39 +1.1
536,332 + 8584 mRNA_216 0.43 +1.3
536,333 + 8584 mRNA_216 0.43 -0.1
536,345 - 8584 mRNA_216 0.44 -0.2
536,350 - 8584 mRNA_216 0.44 +1.7
536,367 - 8584 mRNA_216 0.44 +0.0
536,495 - 8584 mRNA_216 0.48 +0.3
536,501 - 8584 mRNA_216 0.48 +0.9
536,502 - 8584 mRNA_216 0.48 +0.4
536,728 - 8584 mRNA_216 0.55 -0.4
536,792 - 8584 mRNA_216 0.57 -0.5
536,905 - 8584 mRNA_216 0.60 -0.2
537,206 - 8584 mRNA_216 0.70 +0.2
537,366 + 8584 mRNA_216 0.74 -0.5
537,839 - 8584 mRNA_216 0.89 +0.1
537,843 + 8584 mRNA_216 0.89 +0.8
537,845 - 8584 mRNA_216 0.89 +1.5
537,886 + -0.8
538,098 - -0.4
538,514 + -0.2
538,819 + 8585 mRNA_217 0.11 -1.4
539,117 - 8585 mRNA_217 0.24 +1.9

Or see this region's nucleotide sequence