Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_218

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8585 and 8586 are separated by 38 nucleotides8586 and 8587 are separated by 398 nucleotides mRNA_217: 8585 - K02292 crtO beta-carotene ketolase (CrtO type), at 538,550 to 540,960 8585 mRNA_218: 8586 - Hypothetical Protein, at 540,999 to 541,232 8586 mRNA_219: 8587 - Hypothetical Protein, at 541,631 to 542,423 8587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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540,693 - 8585 mRNA_217 0.89 -0.0
540,709 + 8585 mRNA_217 0.90 +0.1
540,843 - +0.1
540,854 + +0.2
540,891 + +0.9
540,970 + +1.4
540,991 - +1.9
540,992 + +0.9
540,996 + +0.6
540,998 - -0.4
541,021 - +0.8
541,024 + 8586 mRNA_218 0.11 +0.3
541,031 + 8586 mRNA_218 0.14 -0.7
541,041 + 8586 mRNA_218 0.18 +1.2
541,053 + 8586 mRNA_218 0.23 +0.4
541,054 + 8586 mRNA_218 0.24 -1.1
541,061 - 8586 mRNA_218 0.26 +0.5
541,065 - 8586 mRNA_218 0.28 -0.4
541,065 - 8586 mRNA_218 0.28 -0.4
541,078 - 8586 mRNA_218 0.34 +0.3
541,084 + 8586 mRNA_218 0.36 +1.3
541,113 + 8586 mRNA_218 0.49 +0.8
541,127 + 8586 mRNA_218 0.55 +1.0
541,165 + 8586 mRNA_218 0.71 -1.4
541,195 - 8586 mRNA_218 0.84 +0.5
541,302 - +1.3
541,459 - +0.4
542,096 - 8587 mRNA_219 0.59 +0.2
542,213 - 8587 mRNA_219 0.73 +0.8
542,224 - 8587 mRNA_219 0.75 +0.7

Or see this region's nucleotide sequence