Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_234

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8601 and 8602 are separated by 79 nucleotides8602 and 8603 are separated by 544 nucleotides mRNA_233: 8601 - K06287 maf septum formation protein, at 575,956 to 577,138 8601 mRNA_234: 8602 - K00452 HAAO 3-hydroxyanthranilate 3,4-dioxygenase, at 577,218 to 578,179 8602 mRNA_235: 8603 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 578,724 to 580,674 8603

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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576,234 - 8601 mRNA_233 0.23 +0.4
576,244 + 8601 mRNA_233 0.24 -0.2
576,244 - 8601 mRNA_233 0.24 -1.1
577,257 + +1.5
577,379 + 8602 mRNA_234 0.17 +0.2
577,982 - 8602 mRNA_234 0.79 +0.2
578,093 - +1.0
578,248 - +0.9
578,250 - +1.6
578,314 + +0.2
578,378 + +1.3
578,379 - +0.9
578,383 - +0.1
578,400 - +0.3
578,543 - +0.9
578,555 - +0.5
579,163 - 8603 mRNA_235 0.23 +1.3

Or see this region's nucleotide sequence