Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_300

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8667 and 8668 are separated by 635 nucleotides mRNA_299: 8667 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 707,483 to 708,587 8667 mRNA_300: 8668 - BLAST transcription factor hoxa13 [Aspergillus bombycis], at 709,223 to 712,870 8668

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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708,303 + 8667 mRNA_299 0.74 -0.4
708,490 - +0.4
708,731 - +0.0
708,734 - +0.5
708,734 + +0.9
709,004 + +0.2
709,028 + +0.1
709,138 - +0.6
709,159 - +1.7
709,180 + -0.5
709,188 - -0.7
709,215 + +0.5
709,243 - +0.6
709,317 - +1.0
709,342 + -0.4
709,443 - +0.3
709,474 - -1.0
709,502 + +0.8
709,626 - 8668 mRNA_300 0.11 -0.2
709,631 - 8668 mRNA_300 0.11 +0.5
709,916 - 8668 mRNA_300 0.19 -0.8
709,945 + 8668 mRNA_300 0.20 -0.0
710,214 - 8668 mRNA_300 0.27 +0.4
710,501 + 8668 mRNA_300 0.35 +0.0
710,932 - 8668 mRNA_300 0.47 -1.1
710,970 - 8668 mRNA_300 0.48 +0.4
711,209 + 8668 mRNA_300 0.54 +0.6
711,592 - 8668 mRNA_300 0.65 +0.9
711,658 - 8668 mRNA_300 0.67 +0.8
712,422 + 8668 mRNA_300 0.88 -0.5
712,561 - +0.1
713,004 - +1.1
713,107 - -0.1
713,250 - -0.2
713,278 + +0.3
713,283 + +0.6
713,404 + +0.4
713,417 - +0.6
713,418 - +1.3
713,422 + -0.2
713,423 - -0.1
713,443 + +0.3
713,443 + +0.5
713,447 + +0.1
713,477 - -0.7
713,483 - +0.8
713,490 + -1.0
713,529 + +1.3
713,533 + +0.3
713,537 - +0.5
713,544 - +0.6
713,545 - +0.6
713,547 + +0.8
713,550 + +0.7
713,556 - +0.3
713,563 + +0.1
713,566 - +0.2
713,576 - -0.4
713,581 + +0.7
713,698 - -0.1
713,715 + +0.3
713,716 + +0.5
713,720 - -1.2
713,868 + +0.5

Or see this region's nucleotide sequence