Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_317

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8684 and 8685 are separated by 201 nucleotides8685 and 8686 are separated by 81 nucleotides mRNA_316: 8684 - K18802 DUG3 glutamine amidotransferase, at 754,275 to 756,026 8684 mRNA_317: 8685 - HMMPfam-DnaJ domain-PF00226,PRINTS-DnaJ domain signature-PR00625,ProSitePatterns-Nt-dnaJ domain signature.-PS00636,ProSiteProfiles-dnaJ domain profile.-PS50076,ProSiteProfiles-IQ motif profile.-PS50096,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 756,228 to 757,512 8685 mRNA_318: 8686 - Interpro Fungal domain of unknown function (DUF1750), at 757,594 to 759,249 8686

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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755,263 - 8684 mRNA_316 0.56 +0.4
755,323 + 8684 mRNA_316 0.60 +0.3
756,084 - +1.2
756,241 - -0.4
756,254 - +0.3
756,409 - 8685 mRNA_317 0.14 -0.0
756,641 - 8685 mRNA_317 0.32 +0.4
756,817 + 8685 mRNA_317 0.46 -0.6
756,974 - 8685 mRNA_317 0.58 +0.5
757,021 + 8685 mRNA_317 0.62 +0.8
757,165 - 8685 mRNA_317 0.73 +0.9
757,425 + -0.3

Or see this region's nucleotide sequence