Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_328

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8695 and 8696 are separated by 264 nucleotides8696 and 8697 are separated by 207 nucleotides mRNA_327: 8695 - KOG0378 40S ribosomal protein S4, at 778,008 to 779,249 8695 mRNA_328: 8696 - K02987 RP-S4e, RPS4 small subunit ribosomal protein S4e, at 779,514 to 780,910 8696 mRNA_329: 8697 - Hypothetical Protein, at 781,118 to 782,181 8697

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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778,699 - 8695 mRNA_327 0.56 -0.1
778,851 + 8695 mRNA_327 0.68 +0.8
778,993 - 8695 mRNA_327 0.79 -0.1
779,144 - +0.2
779,145 - -0.0
779,275 - +0.6
779,286 - +0.1
779,308 + +0.6
779,308 + -1.6
779,347 + +0.1
780,972 + +0.7
780,979 + -0.6
780,986 + +0.5
780,998 + +0.1
781,000 + +0.5
781,002 + +0.2
781,015 - -0.6
781,096 - +0.9
781,117 - +0.5
781,157 - +0.7
781,291 + 8697 mRNA_329 0.16 -0.1
781,556 + 8697 mRNA_329 0.41 +0.1
781,859 + 8697 mRNA_329 0.70 -1.2
781,862 - 8697 mRNA_329 0.70 +0.1
781,882 - 8697 mRNA_329 0.72 +0.7
781,889 - 8697 mRNA_329 0.72 -0.0
781,895 + 8697 mRNA_329 0.73 +0.1

Or see this region's nucleotide sequence