Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_344

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8711 and 8712 are separated by 167 nucleotides8712 and 8713 are separated by 336 nucleotides mRNA_343: 8711 - HMMPfam-Domain of unknown function (DUF4078)-PF13300, at 802,821 to 804,087 8711 mRNA_344: 8712 - K00914 PIK3C3, VPS34 phosphatidylinositol 3-kinase, at 804,255 to 807,496 8712 mRNA_345: 8713 - HMMPfam-Mis12-Mtw1 protein family-PF08202, at 807,833 to 810,278 8713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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803,437 - 8711 mRNA_343 0.49 +1.5
803,752 + 8711 mRNA_343 0.73 -0.7
803,885 - 8711 mRNA_343 0.84 +0.3
804,019 - +0.6
804,049 + +0.3
804,149 - -0.6
804,188 - +0.3
804,192 - +0.0
804,342 + +1.7
804,764 - 8712 mRNA_344 0.16 +2.0
807,047 - 8712 mRNA_344 0.86 +0.5
807,534 - +2.4
807,687 + -0.2
807,694 + +1.1
807,695 + +0.2
807,695 + +0.5
807,839 - -0.1

Or see this region's nucleotide sequence