Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_379

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8746 and 8747 are separated by 163 nucleotides8747 and 8748 are separated by 161 nucleotides mRNA_378: 8746 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 879,759 to 883,039 8746 mRNA_379: 8747 - HMMPfam-Inositolphosphorylceramide synthase subunit Kei1-PF08552, at 883,203 to 884,818 8747 mRNA_380: 8748 - K15322 TSEN2 tRNA-splicing endonuclease subunit Sen2, at 884,980 to 886,576 8748

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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883,095 - +0.4
883,211 - +0.1
883,220 + +0.2
883,221 - -0.2
883,226 + +0.1
883,243 - -0.4
883,251 + +0.7
883,403 - 8747 mRNA_379 0.12 +1.8
883,410 - 8747 mRNA_379 0.13 +0.2
884,274 - 8747 mRNA_379 0.66 +0.6
884,590 - 8747 mRNA_379 0.86 +0.0
884,852 - +0.3
884,894 + +1.1
884,915 + +0.9

Or see this region's nucleotide sequence