Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_388

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_388: 8756 - Hypothetical Protein, at 903,533 to 904,021 8756

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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902,756 + -0.4
902,920 - +0.9
902,937 - +0.4
903,075 + -0.1
903,318 - +0.2
903,784 + 8756 mRNA_388 0.51 +0.6
903,853 + 8756 mRNA_388 0.65 +0.0
903,919 - 8756 mRNA_388 0.79 -0.2
903,919 + 8756 mRNA_388 0.79 -0.6
903,920 - 8756 mRNA_388 0.79 +0.3
903,945 + 8756 mRNA_388 0.84 +0.3
904,026 - +0.4
904,390 + +0.9
904,393 - +1.0
904,393 - +0.6
904,394 + +0.8
904,492 - -0.3
904,501 - +0.4
904,514 + -0.0
904,515 + +1.0
904,516 + +0.4
904,522 - +0.1
904,525 - -0.9
904,541 - +0.3
904,552 + +1.6
904,555 + +0.2
904,556 + -0.4
904,559 + +1.4
904,572 + +0.4
904,590 - -0.4
904,591 - +1.2
904,638 - +0.7
904,675 + +0.2
904,684 - +0.4
904,801 + +0.8

Or see this region's nucleotide sequence