Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_446

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8813 and 8814 are separated by 856 nucleotides mRNA_445: 8813 - K03768 PPIB, ppiB peptidyl-prolyl cis-trans isomerase B (cyclophilin B), at 1,034,694 to 1,036,039 8813 mRNA_446: 8814 - K00254 DHODH, pyrD dihydroorotate dehydrogenase, at 1,036,896 to 1,038,649 8814

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,036,023 - -0.0
1,036,161 + +0.5
1,036,178 + +1.3
1,036,192 - +0.3
1,036,325 - +0.7
1,036,334 - -0.7
1,036,627 - -0.8
1,038,657 - +0.3
1,038,660 - +0.2
1,038,668 + +0.2
1,038,670 + +0.3
1,038,670 - +1.6
1,038,688 + +0.9
1,038,777 - +0.6
1,038,781 - +0.1
1,038,782 + +0.3
1,038,784 + +0.4
1,038,786 + +0.3
1,038,792 - +1.3
1,038,796 - -0.3
1,038,796 + +0.5
1,038,799 + +0.3
1,038,799 + -0.1
1,038,807 - +0.3
1,038,808 + -0.3
1,038,815 - +0.1
1,038,935 + +0.6
1,039,053 - +0.3
1,039,088 + +0.9
1,039,356 - +1.0

Or see this region's nucleotide sequence