Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_459

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8826 and 8827 are separated by 80 nucleotides8827 and 8828 are separated by 262 nucleotides mRNA_458: 8826 - KOG2676 Uncharacterized conserved protein, at 1,066,274 to 1,068,450 8826 mRNA_459: 8827 - K10598 PPIL2, CYC4, CHP60 peptidyl-prolyl cis-trans isomerase-like 2, at 1,068,531 to 1,071,036 8827 mRNA_460: 8828 - K15177 LEO1 RNA polymerase-associated protein LEO1, at 1,071,299 to 1,073,173 8828

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,068,590 - +1.4
1,068,598 + +0.7
1,068,927 - 8827 mRNA_459 0.16 -0.1
1,069,149 + 8827 mRNA_459 0.25 -0.7
1,069,284 + 8827 mRNA_459 0.30 +0.2
1,069,628 - 8827 mRNA_459 0.44 +0.5
1,069,786 + 8827 mRNA_459 0.50 +0.4
1,070,051 - 8827 mRNA_459 0.61 +0.3
1,070,065 - 8827 mRNA_459 0.61 +0.4
1,070,100 + 8827 mRNA_459 0.63 +0.1
1,070,178 + 8827 mRNA_459 0.66 -0.2
1,070,237 + 8827 mRNA_459 0.68 +1.4
1,070,359 - 8827 mRNA_459 0.73 +0.6
1,070,657 - 8827 mRNA_459 0.85 -0.1
1,070,762 - 8827 mRNA_459 0.89 +0.3
1,070,799 + -0.3
1,071,079 - +0.3
1,071,089 - +1.7
1,071,251 + -0.1
1,071,263 - -0.4
1,071,402 - +0.4
1,071,655 - 8828 mRNA_460 0.19 +0.6
1,071,659 - 8828 mRNA_460 0.19 +1.7
1,071,667 + 8828 mRNA_460 0.20 +0.1

Or see this region's nucleotide sequence