Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_468

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8835 and 8836 are separated by 81 nucleotides8836 and 8837 are separated by 846 nucleotides mRNA_467: 8835 - K07748 E1.1.1.170, NSDHL, ERG26 sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating), at 1,084,850 to 1,086,342 8835 mRNA_468: 8836 - Hypothetical Protein, at 1,086,424 to 1,087,519 8836 mRNA_469: 8837 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1,088,366 to 1,093,699 8837

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,086,494 - +1.2
1,086,650 + 8836 mRNA_468 0.21 -0.2
1,086,657 - 8836 mRNA_468 0.21 +0.4
1,086,807 + 8836 mRNA_468 0.35 +1.5
1,086,901 - 8836 mRNA_468 0.44 -0.2
1,087,041 - 8836 mRNA_468 0.56 +1.2
1,087,088 - 8836 mRNA_468 0.61 +0.0
1,087,216 + 8836 mRNA_468 0.72 +0.5
1,087,941 - +0.0
1,087,973 - -0.5
1,087,993 - +0.8
1,088,001 - +0.2
1,088,093 - -0.3
1,088,095 + +0.9
1,088,144 + +0.3
1,088,375 + -0.0
1,088,474 - +0.5

Or see this region's nucleotide sequence