Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_500

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8867 and 8868 are separated by 301 nucleotides8868 and 8869 are separated by 158 nucleotides mRNA_499: 8867 - K00850 pfkA, PFK 6-phosphofructokinase 1, at 1,185,314 to 1,188,631 8867 mRNA_500: 8868 - KOG2543 Origin recognition complex, subunit 5, at 1,188,933 to 1,191,266 8868 mRNA_501: 8869 - K11338 RUVBL2, RVB2, INO80J RuvB-like protein 2, at 1,191,425 to 1,193,408 8869

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,188,647 - -0.4
1,188,664 + +0.2
1,188,686 + +0.9
1,188,688 + -0.0
1,188,706 + -0.2
1,188,948 + +0.8
1,191,318 + +1.0
1,191,324 + +0.1
1,191,362 + -0.9

Or see this region's nucleotide sequence