Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_511

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8878 and 8879 are separated by 176 nucleotides8879 and 8880 are separated by 107 nucleotides mRNA_510: 8878 - K01922 PPCS, coaB phosphopantothenate-cysteine ligase, at 1,214,489 to 1,216,016 8878 mRNA_511: 8879 - KOG1426 FOG RCC1 domain, at 1,216,193 to 1,218,102 8879 mRNA_512: 8880 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF13410,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 1,218,210 to 1,219,403 8880

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,216,143 - -0.1
1,216,552 + 8879 mRNA_511 0.19 -0.6
1,217,441 - 8879 mRNA_511 0.65 +0.4
1,217,527 + 8879 mRNA_511 0.70 +0.8
1,218,048 + +0.5
1,218,438 - 8880 mRNA_512 0.19 -0.4
1,218,981 - 8880 mRNA_512 0.65 +0.2

Or see this region's nucleotide sequence