Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_528

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8895 and 8896 are separated by 510 nucleotides mRNA_527: 8895 - Hypothetical Protein, at 1,258,039 to 1,258,831 8895 mRNA_528: 8896 - BLAST hydroxymethylglutaryl-mitochondrial isoform 1 [Lichth..., at 1,259,342 to 1,261,066 8896

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,258,535 + 8895 mRNA_527 0.63 +1.1
1,258,742 + 8895 mRNA_527 0.89 +0.8
1,258,880 + -0.1
1,258,913 + +0.8
1,259,008 - -1.0
1,259,014 - +0.2
1,260,054 - 8896 mRNA_528 0.41 -0.2
1,260,064 + 8896 mRNA_528 0.42 +0.3
1,260,065 - 8896 mRNA_528 0.42 +0.1
1,260,786 - 8896 mRNA_528 0.84 +0.1

Or see this region's nucleotide sequence