Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_558

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8925 and 8926 are separated by 834 nucleotides8926 and 8927 are separated by 645 nucleotides mRNA_557: 8925 - HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236, at 1,324,650 to 1,329,010 8925 mRNA_558: 8926 - HMMPfam-SH3 domain-PF00018,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 1,329,845 to 1,332,752 8926 mRNA_559: 8927 - KOG4672 Uncharacterized conserved low complexity protein, at 1,333,398 to 1,335,053 8927

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,330,065 + +0.4
1,332,929 + -0.0
1,332,943 - -0.4
1,333,041 - +0.0
1,333,082 - -0.1
1,333,087 + +0.1
1,333,088 - +0.1
1,333,092 - -0.2
1,333,102 + +0.8
1,333,107 + +0.1
1,333,369 + -1.8
1,333,371 - +0.3
1,333,522 - +0.7
1,333,526 + +2.3
1,333,641 - 8927 mRNA_559 0.15 +0.7

Or see this region's nucleotide sequence