Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_588

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8955 and 8956 are separated by 802 nucleotides mRNA_587: 8955 - K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5, at 1,401,874 to 1,405,590 8955 mRNA_588: 8956 - K12609 CAF120 CCR4-NOT transcriptional complex subunit CAF120, at 1,406,393 to 1,408,614 8956

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,405,584 - +0.7
1,405,596 - +0.4
1,406,318 + -0.1
1,406,337 + -0.2
1,406,459 - +1.3
1,406,477 - +0.5
1,406,487 + -0.8
1,406,619 - 8956 mRNA_588 0.10 +0.2
1,406,621 - 8956 mRNA_588 0.10 +0.2
1,406,625 + 8956 mRNA_588 0.10 +0.8
1,406,759 - 8956 mRNA_588 0.16 +0.0
1,406,771 - 8956 mRNA_588 0.17 +0.7
1,406,776 + 8956 mRNA_588 0.17 +1.6
1,406,779 - 8956 mRNA_588 0.17 +0.5
1,406,780 - 8956 mRNA_588 0.17 +1.2
1,407,055 - 8956 mRNA_588 0.30 +0.9
1,407,778 - 8956 mRNA_588 0.62 +0.6
1,407,939 + 8956 mRNA_588 0.70 +0.1
1,408,062 + 8956 mRNA_588 0.75 -1.1
1,408,830 + -0.2
1,409,243 - +0.2
1,409,393 + +0.4

Or see this region's nucleotide sequence