Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_622

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8989 and 8990 are separated by 136 nucleotides8990 and 8991 are separated by 298 nucleotides mRNA_621: 8989 - K14405 FIP1L1, FIP1 pre-mRNA 3'-end-processing factor FIP1, at 1,492,211 to 1,493,623 8989 mRNA_622: 8990 - K18156 ATP23, XRCC6BP1 mitochondrial inner membrane protease ATP23, at 1,493,760 to 1,494,779 8990 mRNA_623: 8991 - KOG3158 HSP90 co-chaperone p23, at 1,495,078 to 1,496,047 8991

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,493,835 + +0.5
1,494,710 + +2.0
1,494,850 - +1.2
1,494,974 - -0.1
1,494,987 + +1.6
1,495,005 - +0.2
1,495,134 + -1.2
1,495,152 + -0.4
1,495,420 + 8991 mRNA_623 0.35 +0.0
1,495,461 - 8991 mRNA_623 0.39 +0.8
1,495,736 - 8991 mRNA_623 0.68 -0.3
1,495,751 - 8991 mRNA_623 0.69 -0.1

Or see this region's nucleotide sequence