Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_623

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8990 and 8991 are separated by 298 nucleotides8991 and 8992 are separated by 204 nucleotides mRNA_622: 8990 - K18156 ATP23, XRCC6BP1 mitochondrial inner membrane protease ATP23, at 1,493,760 to 1,494,779 8990 mRNA_623: 8991 - KOG3158 HSP90 co-chaperone p23, at 1,495,078 to 1,496,047 8991 mRNA_624: 8992 - K13886 CORO1B_1C_6 coronin-1B/1C/6, at 1,496,252 to 1,498,125 8992

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,494,710 + +2.0
1,494,850 - +1.2
1,494,974 - -0.1
1,494,987 + +1.6
1,495,005 - +0.2
1,495,134 + -1.2
1,495,152 + -0.4
1,495,420 + 8991 mRNA_623 0.35 +0.0
1,495,461 - 8991 mRNA_623 0.39 +0.8
1,495,736 - 8991 mRNA_623 0.68 -0.3
1,495,751 - 8991 mRNA_623 0.69 -0.1
1,496,011 - +1.8
1,496,229 + -0.0
1,496,487 - 8992 mRNA_624 0.13 -1.2
1,496,523 + 8992 mRNA_624 0.14 -0.8
1,496,904 + 8992 mRNA_624 0.35 -0.2

Or see this region's nucleotide sequence