Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_662

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9029 and 9030 are separated by 352 nucleotides9030 and 9031 are separated by 338 nucleotides mRNA_661: 9029 - Hypothetical Protein, at 1,593,045 to 1,593,501 9029 mRNA_662: 9030 - HMMPfam-EF-hand domain pair-PF13499,ProSitePatterns-EF-hand calcium-binding domain.-PS00018,ProSiteProfiles-EF-hand calcium-binding domain profile.-PS50222,SUPERFAMILY--SSF47473, at 1,593,854 to 1,595,354 9030 mRNA_663: 9031 - SUPERFAMILY--SSF103196, at 1,595,693 to 1,596,287 9031

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,593,262 - 9029 mRNA_661 0.47 +0.2
1,593,436 - 9029 mRNA_661 0.86 +0.2
1,593,556 - -0.7
1,593,847 + +0.3
1,594,010 + 9030 mRNA_662 0.10 +0.8
1,594,119 - 9030 mRNA_662 0.18 +0.7
1,594,204 - 9030 mRNA_662 0.23 -0.9
1,594,569 + 9030 mRNA_662 0.48 +2.2
1,594,718 + 9030 mRNA_662 0.58 +0.7
1,594,860 - 9030 mRNA_662 0.67 +2.1
1,594,885 - 9030 mRNA_662 0.69 +1.5
1,594,895 + 9030 mRNA_662 0.69 +0.7
1,594,957 + 9030 mRNA_662 0.73 +0.8
1,595,135 + 9030 mRNA_662 0.85 -0.9
1,595,174 + 9030 mRNA_662 0.88 +0.4
1,595,286 + +0.3
1,595,303 + +0.4
1,595,425 - -0.0
1,595,426 + +0.2
1,595,427 - -0.1
1,595,446 + +0.5
1,595,449 + -0.7
1,595,452 + +0.9
1,595,562 - +0.9
1,595,577 - -0.1
1,595,588 + -1.0
1,595,600 + +0.7
1,595,601 - +0.6
1,595,742 - -0.3

Or see this region's nucleotide sequence