Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_664

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9031 and 9032 are separated by 363 nucleotides9032 and 9033 are separated by 260 nucleotides mRNA_663: 9031 - SUPERFAMILY--SSF103196, at 1,595,693 to 1,596,287 9031 mRNA_664: 9032 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,SUPERFAMILY--SSF51197, at 1,596,651 to 1,602,461 9032 mRNA_665: 9033 - K08853 AAK AP2-associated kinase, at 1,602,722 to 1,607,021 9033

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,595,742 - -0.3
1,596,382 - +1.7
1,596,524 + -0.9
1,596,656 - +1.3
1,596,918 + -0.1
1,597,061 + +0.5
1,597,380 + 9032 mRNA_664 0.13 +0.7
1,597,499 - 9032 mRNA_664 0.15 +0.2
1,597,605 - 9032 mRNA_664 0.16 +0.2
1,597,791 - 9032 mRNA_664 0.20 +0.0
1,597,821 + 9032 mRNA_664 0.20 +0.2
1,597,976 + 9032 mRNA_664 0.23 +1.7
1,598,214 + 9032 mRNA_664 0.27 +1.0
1,598,264 + 9032 mRNA_664 0.28 +0.8
1,598,425 + 9032 mRNA_664 0.31 +1.8
1,598,527 - 9032 mRNA_664 0.32 +0.7
1,598,596 - 9032 mRNA_664 0.33 -0.0
1,598,659 - 9032 mRNA_664 0.35 +1.1
1,598,968 - 9032 mRNA_664 0.40 -1.0
1,598,987 + 9032 mRNA_664 0.40 -2.1
1,599,132 - 9032 mRNA_664 0.43 -0.3
1,599,156 - 9032 mRNA_664 0.43 -0.1
1,599,574 + 9032 mRNA_664 0.50 +0.6
1,599,988 + 9032 mRNA_664 0.57 +1.5
1,600,893 - 9032 mRNA_664 0.73 +0.5
1,600,893 + 9032 mRNA_664 0.73 +0.1
1,600,902 + 9032 mRNA_664 0.73 +1.9
1,602,088 - -0.5
1,602,184 - +0.2
1,602,199 - -0.3
1,602,214 + +1.1
1,602,226 + -1.1
1,602,239 + +0.6
1,602,525 - -0.0
1,602,662 - -0.7
1,602,672 + +0.1
1,602,674 + +1.1
1,602,932 + +1.6

Or see this region's nucleotide sequence