Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_715

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9082 and 9083 are separated by 355 nucleotides mRNA_714: 9082 - KOG1201 Hydroxysteroid 17-beta dehydrogenase 11, at 1,705,056 to 1,706,530 9082 mRNA_715: 9083 - KOG2893 Zn finger protein, at 1,706,886 to 1,708,484 9083

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,706,012 + 9082 mRNA_714 0.65 +0.7
1,706,015 - 9082 mRNA_714 0.65 +2.6
1,706,143 + 9082 mRNA_714 0.74 +0.4
1,706,177 + 9082 mRNA_714 0.76 +1.3
1,706,454 - -0.1
1,706,594 - -0.6
1,706,639 - -0.1
1,706,769 + +1.4
1,706,864 - +0.9
1,706,872 - -0.0
1,707,085 - 9083 mRNA_715 0.12 +0.6
1,707,181 + 9083 mRNA_715 0.18 -0.3
1,707,363 + 9083 mRNA_715 0.30 +0.1
1,708,649 + -1.0
1,708,656 + +0.2
1,708,669 + +1.3
1,708,767 - +0.2
1,708,784 + -0.1
1,708,789 + +1.2
1,708,809 - +0.3
1,708,819 - -1.6
1,708,919 - -0.3
1,708,941 + +0.4
1,709,086 + +0.1
1,709,101 - +0.6
1,709,245 + +0.5

Or see this region's nucleotide sequence