Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_728

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9095 and 9096 are separated by 282 nucleotides9096 and 9097 are separated by 526 nucleotides mRNA_727: 9095 - HMMPfam-Peroxidase, family 2-PF01328,ProSiteProfiles-Heme haloperoxidase family profile.-PS51405,SUPERFAMILY--SSF47571, at 1,729,810 to 1,731,316 9095 mRNA_728: 9096 - K18669 DYRK2_3_4 dual specificity tyrosine-phosphorylation-regulated kinase 2/3/4, at 1,731,599 to 1,733,273 9096 mRNA_729: 9097 - BLAST CMGC/DYRK/DYRK2 protein kinase [Microbotryum lychnidi..., at 1,733,800 to 1,738,518 9097

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,730,692 + 9095 mRNA_727 0.59 -0.0
1,730,803 + 9095 mRNA_727 0.66 +0.2
1,730,821 - 9095 mRNA_727 0.67 -0.0
1,731,284 - +2.0
1,731,290 + -0.6
1,731,695 + +0.1
1,731,956 + 9096 mRNA_728 0.21 +0.8
1,732,043 + 9096 mRNA_728 0.27 +1.8
1,732,143 - 9096 mRNA_728 0.32 -0.1
1,732,145 - 9096 mRNA_728 0.33 -0.4
1,732,458 + 9096 mRNA_728 0.51 +0.1
1,732,551 + 9096 mRNA_728 0.57 -0.4
1,732,671 - 9096 mRNA_728 0.64 +0.1
1,732,711 + 9096 mRNA_728 0.66 -0.3
1,732,832 + 9096 mRNA_728 0.74 +0.4
1,732,894 - 9096 mRNA_728 0.77 +0.3
1,733,126 - -0.1
1,733,143 - +0.6
1,733,201 - -0.5
1,733,203 + -0.4
1,733,242 - +0.2
1,733,253 + +0.2
1,733,465 + +0.1
1,733,573 + -0.0
1,733,622 - -0.2
1,733,872 + +0.2
1,734,220 - +0.1

Or see this region's nucleotide sequence