Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_756

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9123 and 9124 are separated by 89 nucleotides9124 and 9125 are separated by 359 nucleotides mRNA_755: 9123 - HMMPfam-Ribosomal protein L9, N-terminal domain-PF01281,SUPERFAMILY--SSF55658, at 1,802,135 to 1,802,908 9123 mRNA_756: 9124 - HMMPfam-Protein of unknown function (DUF3074)-PF11274,SUPERFAMILY--SSF55961, at 1,802,998 to 1,803,902 9124 mRNA_757: 9125 - K01493 comEB dCMP deaminase, at 1,804,262 to 1,807,266 9125

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,802,277 - 9123 mRNA_755 0.18 +1.1
1,802,279 + 9123 mRNA_755 0.19 +1.5
1,802,545 - 9123 mRNA_755 0.53 +0.0
1,802,721 + 9123 mRNA_755 0.76 +0.1
1,802,852 - +0.5
1,802,863 + +0.0
1,802,895 + -0.1
1,803,020 - +1.1
1,803,051 - +0.5
1,803,618 + 9124 mRNA_756 0.69 +0.4
1,803,638 + 9124 mRNA_756 0.71 +0.9
1,803,727 + 9124 mRNA_756 0.81 +1.6
1,803,756 + 9124 mRNA_756 0.84 +0.0
1,803,880 + +0.6
1,803,914 + +0.3
1,803,927 + +0.8
1,803,928 + -0.1
1,803,944 + -0.2
1,804,037 - -0.2
1,804,210 - +0.4
1,804,362 - +0.7
1,804,495 - +0.3
1,804,694 + 9125 mRNA_757 0.14 +1.2
1,804,742 + 9125 mRNA_757 0.16 +1.1

Or see this region's nucleotide sequence