Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_765

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9132 and 9133 are separated by 535 nucleotides9133 and 9134 are separated by 224 nucleotides mRNA_764: 9132 - Hypothetical Protein, at 1,825,300 to 1,826,373 9132 mRNA_765: 9133 - K12849 PRPF38A pre-mRNA-splicing factor 38A, at 1,826,909 to 1,827,718 9133 mRNA_766: 9134 - K02899 RP-L27, MRPL27, rpmA large subunit ribosomal protein L27, at 1,827,943 to 1,828,724 9134

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,825,972 - 9132 mRNA_764 0.63 +1.2
1,825,979 + 9132 mRNA_764 0.63 +1.0
1,826,119 - 9132 mRNA_764 0.76 +0.9
1,826,240 - 9132 mRNA_764 0.88 -0.2
1,826,277 + +0.4
1,826,322 - +0.3
1,826,408 - +0.7
1,826,523 - +1.1
1,826,867 + -0.6
1,827,761 + +0.9
1,827,877 - +0.9
1,827,882 + +0.3
1,827,883 + +0.3

Or see this region's nucleotide sequence