Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_825

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9192 and 9193 are separated by 469 nucleotides9193 and 9194 are separated by 239 nucleotides mRNA_824: 9192 - Hypothetical Protein, at 1,974,667 to 1,975,574 9192 mRNA_825: 9193 - HMMPfam-Modifier of rudimentary (Mod(r)) protein-PF07200,ProSiteProfiles-VPS37 C-terminal domain profile.-PS51314,SUPERFAMILY--SSF140111, at 1,976,044 to 1,976,786 9193 mRNA_826: 9194 - HMMPfam-T-complex protein 11-PF05794, at 1,977,026 to 1,979,152 9194

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,975,054 + 9192 mRNA_824 0.43 -0.1
1,975,607 - -0.5
1,975,657 + -0.2
1,975,757 + -0.1
1,975,897 - +1.4
1,976,030 - +1.2
1,976,340 - 9193 mRNA_825 0.40 -0.8
1,976,616 - 9193 mRNA_825 0.77 -0.3
1,976,663 + 9193 mRNA_825 0.83 +1.9
1,976,799 + +0.5
1,976,836 - +0.2
1,976,939 + -0.4
1,976,939 - +0.3
1,976,959 - +0.2
1,977,106 + +0.0
1,977,261 + 9194 mRNA_826 0.11 +1.6
1,977,273 - 9194 mRNA_826 0.12 +0.3

Or see this region's nucleotide sequence