Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_829

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9196 and 9197 are separated by 689 nucleotides9197 and 9198 are separated by 432 nucleotides mRNA_828: 9196 - HMMPfam-Protein of unknown function (DUF2420)-PF10336, at 1,980,858 to 1,983,509 9196 mRNA_829: 9197 - HMMPfam-Spc7 kinetochore protein-PF08317,SMART-Spc7 kinetochore protein-SM00787, at 1,984,199 to 1,988,562 9197 mRNA_830: 9198 - K00413 CYC1, CYT1, petC ubiquinol-cytochrome c reductase cytochrome c1 subunit, at 1,988,995 to 1,990,549 9198

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,984,010 + -0.3
1,984,043 + +0.6
1,988,635 - -0.5
1,988,638 + -0.0
1,988,644 - +0.6
1,988,650 - +1.1
1,988,935 + -0.6
1,988,936 + +0.7
1,988,945 - +0.8
1,988,949 - -0.2
1,988,953 - -0.4

Or see this region's nucleotide sequence