Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_848

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9215 and 9216 are separated by 477 nucleotides9216 and 9217 are separated by 173 nucleotides mRNA_847: 9215 - HMMPfam-Amino acid permease-PF13520, at 2,029,732 to 2,032,618 9215 mRNA_848: 9216 - K17989 SDS, SDH, CHA1 L-serine/L-threonine ammonia-lyase, at 2,033,096 to 2,034,366 9216 mRNA_849: 9217 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 2,034,540 to 2,035,724 9217

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
2,032,144 - 9215 mRNA_847 0.84 +0.8
2,032,246 - 9215 mRNA_847 0.87 +0.1
2,032,246 + 9215 mRNA_847 0.87 +0.4
2,032,526 + -0.4
2,032,555 + +0.5
2,032,558 + +1.2
2,032,676 - -0.2
2,032,691 + +0.9
2,032,707 + +0.6
2,032,783 - -0.7
2,032,824 - -0.1
2,032,837 - +0.1
2,032,864 - +0.6
2,033,007 - -0.5
2,033,014 + +0.4
2,033,028 - +0.2
2,033,290 + 9216 mRNA_848 0.15 -0.5
2,034,033 - 9216 mRNA_848 0.74 -0.0
2,034,056 - 9216 mRNA_848 0.76 +1.5
2,034,149 + 9216 mRNA_848 0.83 +0.5
2,034,251 + +0.4
2,034,340 - -0.0
2,034,486 - +1.1
2,034,486 - +1.6
2,034,491 + +0.1
2,034,637 + +0.4
2,034,754 - 9217 mRNA_849 0.18 +0.6
2,035,339 - 9217 mRNA_849 0.67 +0.4

Or see this region's nucleotide sequence