Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_857

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9224 and 9225 are separated by 165 nucleotides9225 and 9226 are separated by 504 nucleotides mRNA_856: 9224 - KOG0828 Predicted E3 ubiquitin ligase, at 2,049,968 to 2,053,108 9224 mRNA_857: 9225 - K14565 NOP58 nucleolar protein 58, at 2,053,274 to 2,055,374 9225 mRNA_858: 9226 - K10599 PRPF19, PRP19 pre-mRNA-processing factor 19, at 2,055,879 to 2,057,799 9226

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,052,536 + 9224 mRNA_856 0.82 +0.7
2,052,677 + 9224 mRNA_856 0.86 +0.9
2,052,693 - 9224 mRNA_856 0.87 -0.1
2,053,157 + +0.5
2,055,569 + +0.7
2,055,579 - -1.0
2,055,616 - +0.9
2,055,684 - +1.5
2,055,696 - +0.6
2,055,698 + +0.3
2,055,700 + -0.2
2,055,702 + +0.6
2,055,814 + +0.1
2,055,830 + -0.4

Or see this region's nucleotide sequence