Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_884

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9252 and 9253 are separated by 118 nucleotides mRNA_884: 9252 - Hypothetical Protein, at 2,111,013 to 2,111,465 9252 mRNA_885: 9253 - K10590 TRIP12 E3 ubiquitin-protein ligase TRIP12, at 2,111,584 to 2,117,077 9253

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,110,018 - +0.9
2,110,118 - -0.3
2,110,128 + +0.6
2,110,131 - +0.8
2,110,152 + +0.5
2,110,399 + +0.9
2,110,433 + +0.7
2,111,003 + +0.8
2,111,048 - +0.3
2,111,160 - 9252 mRNA_884 0.32 +2.0
2,111,272 + 9252 mRNA_884 0.57 +0.8
2,111,379 + 9252 mRNA_884 0.81 +1.1
2,111,487 - -0.2
2,112,003 + +0.4
2,112,022 + +0.4
2,112,112 - +0.2
2,112,224 + 9253 mRNA_885 0.12 -0.3
2,112,351 - 9253 mRNA_885 0.14 -0.6
2,112,378 + 9253 mRNA_885 0.14 +0.3

Or see this region's nucleotide sequence