Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9298 and 9299 are separated by 237 nucleotides mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1,600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1 + +1.1
1 + +0.8
1 + +0.5
1 + +0.2
1 + +0.2
2 + +0.3
2 + -1.0
5 + +0.3
18 + +0.2
30 + +0.0
37 + +0.3
37 + +0.6
41 + +0.2
42 + +0.1
44 + +0.8
49 + +0.0
49 + -0.1
50 + +0.1
54 + +0.5
58 - +0.6
60 - +1.0
60 + -0.2
60 - +0.2
61 - -0.7
61 + -0.4
63 + +1.5
63 + +1.1
63 + -0.7
63 + +0.3
63 + +0.1
63 + +0.3
64 + -0.4
66 - +0.2
66 + +0.5
70 + -0.2
70 + +1.5
70 - +0.4
71 + +0.3
73 + +0.6
75 - +0.1
77 - +0.6
78 + +0.1
78 - -0.6
78 + +0.4
78 + +0.8
78 + -1.3
78 + +1.0
78 + +0.8
78 + -0.2
78 + -0.9
79 + +1.8
81 - -0.4
81 - +0.2
82 + -0.3
85 + +0.4
104 + +0.5
126 + +0.3
126 + -1.5
128 - +1.5
135 + -0.8
142 + +0.5
150 + -0.1
154 + -2.4
157 + -0.4
171 - -0.0
171 + +0.8
172 + -0.6
172 + -0.1
175 - -0.6
176 - -0.2
177 - -0.1
177 - +0.4
191 - +0.1
192 + +1.0
192 + +0.8
192 + +0.5
193 + -0.1
193 + +0.2
193 + -0.1
198 - +0.2
218 + +0.1
225 + +0.7
235 + -0.3
242 + +0.9
263 - -0.1
293 + -0.0
303 + +1.6
333 - +0.6
339 - +1.0
348 + +0.6
349 + +0.4
377 - +0.9
381 - +0.5
469 + -0.9
487 - 9298 mRNA_930 0.10 -0.2
722 + 9298 mRNA_930 0.29 +1.5
1,641 - +1.0
1,656 - +0.5
1,768 - -0.2
1,778 - -0.6
1,794 + +1.2

Or see this region's nucleotide sequence