Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_936

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9303 and 9304 are separated by 444 nucleotides mRNA_935: 9303 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 14,546 to 16,225 9303 mRNA_936: 9304 - K10365 CAPZB capping protein (actin filament) muscle Z-line, beta, at 16,670 to 18,291 9304

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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15,676 - 9303 mRNA_935 0.67 -0.2
15,682 + 9303 mRNA_935 0.68 +0.4
15,683 + 9303 mRNA_935 0.68 -0.4
15,687 + 9303 mRNA_935 0.68 -0.5
15,689 + 9303 mRNA_935 0.68 +0.7
15,813 - 9303 mRNA_935 0.75 -1.1
15,835 - 9303 mRNA_935 0.77 +0.3
15,955 - 9303 mRNA_935 0.84 -0.2
16,063 - -0.8
16,110 - +0.3
16,143 + +0.3
16,233 + +0.5
16,275 - +1.6
16,309 - +2.1
16,338 - +0.6
16,448 - +0.1
16,455 + -0.4
16,457 - +0.0
16,467 + -0.0
16,473 - +1.1
16,551 + +0.4
16,603 + +1.0
16,699 + +0.5
16,699 + +1.0
16,746 + +0.1
16,801 + +0.1
17,057 + 9304 mRNA_936 0.24 -1.0
17,190 + 9304 mRNA_936 0.32 +0.2
17,339 + 9304 mRNA_936 0.41 -1.3
17,615 - 9304 mRNA_936 0.58 +2.4
17,727 + 9304 mRNA_936 0.65 +0.6
17,813 + 9304 mRNA_936 0.70 +1.2
17,909 + 9304 mRNA_936 0.76 +0.2
17,959 - 9304 mRNA_936 0.79 -0.4
18,343 - -0.4
18,347 + -0.4
18,349 + +0.2
18,359 + +1.8
18,361 + -0.5
18,460 - +1.4
18,486 - -0.0
18,492 - +0.0
18,511 - +0.5
18,621 - +0.9
18,621 - -0.3
18,725 - -0.4
18,735 + +0.5
18,750 - +1.0
18,765 - +0.5
18,774 - +0.4
18,779 - +1.7
18,941 + +0.4
18,954 - +0.1
19,070 + -0.8
19,188 - -0.7
19,201 - -0.9
19,220 + +0.5
19,226 + +0.3
19,228 - +1.1
19,231 + -0.1
19,240 - +0.1

Or see this region's nucleotide sequence