Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_941

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9308 and 9309 are separated by 311 nucleotides9309 and 9310 are separated by 98 nucleotides mRNA_940: 9308 - Hypothetical Protein, at 25,419 to 26,964 9308 mRNA_941: 9309 - HMMPfam-Calcineurin-like phosphoesterase-PF00149,SUPERFAMILY--SSF56300, at 27,276 to 29,421 9309 mRNA_942: 9310 - KOG1743 Ferric reductase-like proteins, at 29,520 to 30,621 9310

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
26,379 + 9308 mRNA_940 0.62 -1.0
26,433 - 9308 mRNA_940 0.66 -0.3
26,439 - 9308 mRNA_940 0.66 +0.8
26,441 - 9308 mRNA_940 0.66 +0.8
26,457 - 9308 mRNA_940 0.67 +0.7
26,516 - 9308 mRNA_940 0.71 +0.6
26,556 + 9308 mRNA_940 0.74 +0.8
26,560 + 9308 mRNA_940 0.74 +0.4
26,561 - 9308 mRNA_940 0.74 -0.2
26,566 + 9308 mRNA_940 0.74 +0.8
26,619 + 9308 mRNA_940 0.78 +2.3
26,629 + 9308 mRNA_940 0.78 +0.6
26,672 - 9308 mRNA_940 0.81 +0.3
26,727 + 9308 mRNA_940 0.85 -0.0
26,727 - 9308 mRNA_940 0.85 +1.4
26,727 - 9308 mRNA_940 0.85 -0.4
26,728 + 9308 mRNA_940 0.85 -0.2
26,820 + +0.5
26,822 + +0.1
26,866 - +0.7
26,869 + -0.7
26,891 + +1.8
26,960 - +0.0
27,001 - +0.2
27,021 + +0.7
27,021 - -0.2
27,025 - +1.1
27,025 - +1.3
27,074 - +0.8
27,119 + +1.1
27,156 - +0.9
27,159 - +1.2
27,197 + +0.1
27,409 - +1.2
27,417 - -0.1
27,443 - +0.4
27,447 - +1.3
27,470 - +0.0
27,507 + 9309 mRNA_941 0.11 +0.6
27,559 + 9309 mRNA_941 0.13 -0.8
27,562 - 9309 mRNA_941 0.13 -0.3
28,047 - 9309 mRNA_941 0.36 -1.3
28,098 + 9309 mRNA_941 0.38 +0.6
28,120 + 9309 mRNA_941 0.39 +1.1
28,204 - 9309 mRNA_941 0.43 +0.7
28,485 + 9309 mRNA_941 0.56 +0.4
28,717 + 9309 mRNA_941 0.67 +0.8
28,719 - 9309 mRNA_941 0.67 +0.2
28,877 - 9309 mRNA_941 0.75 +0.5
28,976 - 9309 mRNA_941 0.79 +0.4
29,208 - +0.0
29,253 - +0.1
29,258 + +0.4
29,268 + +1.5
29,303 + +0.7
29,378 + +2.2
29,392 - +1.5
29,402 + -0.5
29,463 - -0.9
29,474 + +0.4
30,419 + 9310 mRNA_942 0.82 +0.2

Or see this region's nucleotide sequence