Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1001

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9368 and 9369 are separated by 173 nucleotides9369 and 9370 are separated by 562 nucleotides mRNA_1000: 9368 - BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ..., at 171,507 to 175,243 9368 mRNA_1001: 9369 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 175,417 to 177,383 9369 mRNA_1002: 9370 - KOG3435 Mitochondrial/chloroplast ribosomal protein L54/L37, at 177,946 to 178,405 9370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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174,840 - 9368 mRNA_1000 0.89 +0.8
174,847 + 9368 mRNA_1000 0.89 -0.2
174,873 - +0.4
174,880 + +0.6
174,981 - -0.2
175,107 - +0.0
175,644 + 9369 mRNA_1001 0.12 -0.0
175,675 - 9369 mRNA_1001 0.13 +0.3
175,697 - 9369 mRNA_1001 0.14 -0.7
175,794 + 9369 mRNA_1001 0.19 +0.6
176,105 - 9369 mRNA_1001 0.35 +0.2
176,143 + 9369 mRNA_1001 0.37 +0.5
176,251 + 9369 mRNA_1001 0.42 -1.2
176,460 + 9369 mRNA_1001 0.53 +0.4
176,464 - 9369 mRNA_1001 0.53 +0.5
176,581 + 9369 mRNA_1001 0.59 +0.1
176,695 - 9369 mRNA_1001 0.65 -0.0
176,707 + 9369 mRNA_1001 0.66 -0.8
176,877 - 9369 mRNA_1001 0.74 +0.1
176,880 + 9369 mRNA_1001 0.74 -0.4
177,002 - 9369 mRNA_1001 0.81 -0.8
177,021 + 9369 mRNA_1001 0.82 +0.2
177,677 + +0.1
177,854 - +1.2

Or see this region's nucleotide sequence