Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1047

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9414 and 9415 are separated by 413 nucleotides9415 and 9416 are separated by 184 nucleotides mRNA_1046: 9414 - K11346 ING4 inhibitor of growth protein 4, at 270,342 to 271,774 9414 mRNA_1047: 9415 - K19054 FXN frataxin, at 272,188 to 272,699 9415 mRNA_1048: 9416 - KOG1812 Predicted E3 ubiquitin ligase, at 272,884 to 273,999 9416

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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271,188 + 9414 mRNA_1046 0.59 -0.0
271,214 - 9414 mRNA_1046 0.61 -0.1
271,234 + 9414 mRNA_1046 0.62 +0.5
271,240 + 9414 mRNA_1046 0.63 +2.0
271,279 - 9414 mRNA_1046 0.65 -0.1
271,502 - 9414 mRNA_1046 0.81 -0.6
271,661 - -0.8
271,664 + +0.3
271,756 - +0.0
271,786 + +0.3
271,803 - -0.3
271,804 - +0.6
271,805 + +1.5
271,805 + +0.8
271,808 - -0.1
271,811 - +0.3
271,832 + +0.4
273,098 - 9416 mRNA_1048 0.19 +0.2
273,139 + 9416 mRNA_1048 0.23 +0.5
273,140 + 9416 mRNA_1048 0.23 +0.8
273,260 + 9416 mRNA_1048 0.34 -0.6
273,263 - 9416 mRNA_1048 0.34 +0.4
273,528 + 9416 mRNA_1048 0.58 +0.6
273,534 + 9416 mRNA_1048 0.58 +0.7

Or see this region's nucleotide sequence