Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1068

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9435 and 9436 are separated by 163 nucleotides9436 and 9437 are separated by 96 nucleotides mRNA_1067: 9435 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 323,098 to 325,825 9435 mRNA_1068: 9436 - Hypothetical Protein, at 325,989 to 327,863 9436 mRNA_1069: 9437 - K11267 PDS5 sister chromatid cohesion protein PDS5, at 327,960 to 333,301 9437

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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325,306 + 9435 mRNA_1067 0.81 +0.3
325,636 + +0.0
325,686 - -0.3
325,791 - +0.2
325,859 + -0.7
325,885 + +0.6
325,905 + -0.4
325,909 + +0.3
325,932 + +0.4
326,030 - +0.2
326,040 - +1.3
326,045 + +1.6
326,072 - +0.1
326,073 + +0.2
326,175 - -0.2
326,194 - 9436 mRNA_1068 0.11 +0.7
326,204 + 9436 mRNA_1068 0.11 -0.7
326,216 - 9436 mRNA_1068 0.12 +1.9
326,220 - 9436 mRNA_1068 0.12 +0.1
326,346 - 9436 mRNA_1068 0.19 -0.5
326,490 - 9436 mRNA_1068 0.27 +0.9
327,222 - 9436 mRNA_1068 0.66 +0.4
327,346 - 9436 mRNA_1068 0.72 -0.5
327,370 - 9436 mRNA_1068 0.74 -0.2
327,538 - 9436 mRNA_1068 0.83 -0.2
327,847 - -0.6
327,894 - +0.4

Or see this region's nucleotide sequence