Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1106

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9473 and 9474 are separated by 197 nucleotides9474 and 9475 are separated by 390 nucleotides mRNA_1105: 9473 - Hypothetical Protein, at 417,505 to 418,471 9473 mRNA_1106: 9474 - Hypothetical Protein, at 418,669 to 421,245 9474 mRNA_1107: 9475 - KOG0123 Polyadenylate-binding protein (RRM superfamily), at 421,636 to 422,494 9475

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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417,742 - 9473 mRNA_1105 0.25 +1.3
418,027 + 9473 mRNA_1105 0.54 -0.7
418,484 - +0.2
418,568 + -0.3
418,615 - +0.8
418,739 - +0.3
421,258 - +0.9
421,263 + +1.0
421,401 + +2.2
421,407 + +0.5
421,452 + -0.3

Or see this region's nucleotide sequence