Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1134

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9501 and 9502 are separated by 353 nucleotides9502 and 9503 are separated by 80 nucleotides mRNA_1133: 9501 - Hypothetical Protein, at 485,139 to 486,293 9501 mRNA_1134: 9502 - K10685 UBLE1B, SAE2, UBA2 ubiquitin-like 1-activating enzyme E1 B, at 486,647 to 489,747 9502 mRNA_1135: 9503 - K04532 NAE1, APPBP1 amyloid beta precursor protein binding protein 1, at 489,828 to 492,159 9503

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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485,705 - 9501 mRNA_1133 0.49 +0.2
485,774 + 9501 mRNA_1133 0.55 -0.2
485,789 - 9501 mRNA_1133 0.56 +0.5
485,839 + 9501 mRNA_1133 0.61 -0.2
485,849 + 9501 mRNA_1133 0.61 +0.1
485,927 - 9501 mRNA_1133 0.68 -0.1
486,036 - 9501 mRNA_1133 0.78 +1.1
486,098 - 9501 mRNA_1133 0.83 -0.8
486,313 + -0.7
486,328 + +0.1
486,361 + +0.6
486,484 - -0.7
486,747 - +1.4
487,099 - 9502 mRNA_1134 0.15 -0.0
489,800 + -0.7
489,803 + -0.2
489,811 - +0.7
489,913 - -0.1

Or see this region's nucleotide sequence